Distribution and characterization of over 1000 T-DNA tags in rice genome
As a staple food crop for more than one half of the world's population and a major model system in cereal genome research, rice (Oryza sativa L.) is the first grass species to be sequenced. The two draft sequences of the rice subspecies japonica and indica have been completed and were publicly available (Goff et al., 2002; Goff et al., 2002; Yu et al., 2002). A fine physical map of the chromosome 4 and two high quality finished sequences of chromosome 1 and 4 have been produced (Feng et al., 2002; Yu et al., 2002; Sasaki et al., 2002; Zhao et al., 2002). With the completion of the rice genome sequencing, attention is turning increasingly to characterize the functions of a large number of genes. Reverse genetics aims to determine the function of a gene ((Maes et al., 1999).


List of the T-DNA insertion postions (download rice tdna.xls )

The table contain a list of mapped T-DNA tags with references to the position of the insertion and the tagged genes

Abbreviations used in the tables:
Code: code of T-DNA tags
cM: cM position of the BAC/PAC clones
Chr.: no. of the chromosome
BAC/PAC Accession: Accession number of the mapped BAC/PACs
BAC/PAC name: name of the BAC/PACs
Position: Positions of the insertion on the BAC/PACs
Protein function: predicted funtion of the coded protein
Region: Region of the T-DNA insertion

Chromosome 1.
Chromosome 2.
Chromosome 3.
Chromosome4.
Chromosome5.
Chromosome 6.
Chromosome 7.
Chromosome 8.
Chromosome 9.
Chromosome 10.
Chromosome 11.
Chromosome 12.


The State Key Laboratory of Plant Physiology & Biochemistry
College of Life Science, Huajiachi Campus
Zhejiang University, Hangzhou, China
Postcode: 310029

Email: pwu@zju.edu.cn